YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP11_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.93
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	45	0.92
Transmembrane Helix	46	69	0.87
Cytoplasmic	70	75	0.83
Transmembrane Helix	76	97	0.93
Non-Cytoplasmic	98	121	0.91
Transmembrane Helix	122	142	0.90
Cytoplasmic	143	170	0.91
Transmembrane Helix	171	194	0.84
Non-Cytoplasmic	195	207	0.78
Transmembrane Helix	208	227	0.92
Cytoplasmic	228	235	0.86
Transmembrane Helix	236	256	0.95
Non-Cytoplasmic	257	266	0.73
Transmembrane Helix	267	286	0.95
Cytoplasmic	287	305	0.88
Transmembrane Helix	306	324	0.96
Non-Cytoplasmic	325	326	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSLVFFFL FLVLVVPCLS HGTGGDHDDD EASHVKSSDL KSKSLISVKI ACLVIIFVLT  60
   61 FISGVSPYFL KWSQGFLVLG TQFAGGVFLA TALMHFLSDA DETFRGLLTA EGESEPSPAY 120
  121 PFAYMLACAG FMLTMLADSV IAHIYSKTQN DLELQGEDKS NQRSATTETS IGDSILLIVA 180
  181 LCFHSVFEGI AIGISETKSD AWRALWTITL HKIFAAIAMG IALLRMIPDR PLFSSITYSF 240
  241 AFAISSPIGV AIGIVIDATT QGSIADWIFA LSMSLACGVF VYVSVNHLLA KGYRPNKKVH 300
  301 VDEPRYKFLA VLFGVVVIAI VMIWDT