YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP10_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.92
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	52	0.98
Transmembrane Helix	53	73	0.91
Cytoplasmic	74	85	0.82
Transmembrane Helix	86	106	0.96
Non-Cytoplasmic	107	127	0.92
Transmembrane Helix	128	151	0.88
Cytoplasmic	152	209	0.97
Transmembrane Helix	210	230	0.88
Non-Cytoplasmic	231	240	0.79
Transmembrane Helix	241	262	0.82
Cytoplasmic	263	271	0.79
Transmembrane Helix	272	293	0.92
Non-Cytoplasmic	294	303	0.83
Transmembrane Helix	304	327	0.84
Cytoplasmic	328	343	0.79
Transmembrane Helix	344	361	0.91
Non-Cytoplasmic	362	364	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSHVIFSA SIALFLLLSI SHFPGALSQS NKDCQSKSNY SCIDKNKALD LKLLSIFSIL  60
   61 ITSLIGVCLP FFARSIPAFQ PEKSHFLIVK SFASGIILST GFMHVLPDSF EMLSSPCLND 120
  121 NPWHKFPFAG FVAMMSAVFT LMVDSITTSV FTKSGRKDLR ADVASVETPD QEIGHVQVHG 180
  181 HVHSHTLPHN LHGENDKELG SYLQLLRYRI LAIVLELGIV VQSIVIGLSV GDTNNTCTIK 240
  241 GLVAALCFHQ MFEGMGLGGC ILQAEYGWVK KAVMAFFFAV TTPFGVVLGM ALSKTYKENS 300
  301 PESLITVGLL NASSAGLLIY MALVDLLAAD FMGQKMQRSI KLQLKSYAAV LLGAGGMSVM 360
  361 AKWA