YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILISGAA GVSIPLVGTL LPLNGGLMRG AKAFAAGVIL ATGFVHMLSG GSKALSDPCL  60
   61 PEFPWKMFPF PEFFAMVAAL LTLLADFMIT GYYERKQEKM MNQSVESLGT QVSVMSDPGL 120
  121 ESGFLRDQED GGALHIVGMR AHAEHHRHSL SMGAEGFEAL SKRSGVSGHG HGHSHGHGDV 180
  181 GLDSGVRHVV VSQILEMGIV SHSIIIGISL GVSHSPCTIR PLLLALSFHQ FFEGFALGGC 240
  241 VAEARLTPRG SAMMAFFFAI TTPIGVAVGT AIASSYNSYS VAALVAEGVL DSLSAGILVY 300
  301 MALVDLIAAD FLSKKMSVDF RVQVVSYCFL FLGAGMMSAL AIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	25	0.77
Cytoplasmic	26	32	0.72
Transmembrane Helix	33	52	0.88
Non-Cytoplasmic	53	72	0.85
Transmembrane Helix	73	93	0.93
Cytoplasmic	94	193	0.98
Transmembrane Helix	194	214	0.70
Non-Cytoplasmic	215	221	0.57
Transmembrane Helix	222	242	0.71
Cytoplasmic	243	253	0.75
Transmembrane Helix	254	274	0.94
Non-Cytoplasmic	275	287	0.72
Transmembrane Helix	288	309	0.81
Cytoplasmic	310	322	0.79
Transmembrane Helix	323	343	0.94
Non-Cytoplasmic	344	344	0.99