YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.65
Transmembrane Helix	10	28	0.71
Non-Cytoplasmic	29	51	0.90
Transmembrane Helix	52	75	0.87
Cytoplasmic	76	84	0.87
Transmembrane Helix	85	105	0.95
Non-Cytoplasmic	106	124	0.93
Transmembrane Helix	125	146	0.87
Cytoplasmic	147	192	0.92
Transmembrane Helix	193	215	0.84
Non-Cytoplasmic	216	223	0.81
Transmembrane Helix	224	245	0.88
Cytoplasmic	246	254	0.86
Transmembrane Helix	255	278	0.90
Non-Cytoplasmic	279	285	0.84
Transmembrane Helix	286	307	0.92
Cytoplasmic	308	324	0.84
Transmembrane Helix	325	344	0.93
Non-Cytoplasmic	345	347	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTQHMNQ IFLVLLLISF AISPAISTVP KECETDSTDS CIDKTKALPL KIVAIVAILV  60
   61 TSMIGVAAPL FSRYVTFLHP DGKIFMIIKC FASGIILGTG FMHVLPDSFE MLSSPCLEDN 120
  121 PWHKFPFTGF VAMLSGLVTL AIDSIATSLY TKKAVADDSE ERTTPMIIQI DHLPLTTKER 180
  181 SSTCSKQLLR YRVIATVLEL GIIVHSVVIG LSLGATNDTC TIKGLIAALC FHQMFEGMGL 240
  241 GGCILQAEYT NVKKFVMAFF FAVTTPSGIA LGIALSSVYK DNSPTALITV GLLNACSAGL 300
  301 LIYMALVDLL AAEFMGSMLQ RSVKLQLNCF GAALLGCGGM SVLAKWA