YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP7_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.78
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	56	0.93
Transmembrane Helix	57	77	0.92
Cytoplasmic	78	90	0.84
Transmembrane Helix	91	110	0.94
Non-Cytoplasmic	111	131	0.95
Transmembrane Helix	132	154	0.92
Cytoplasmic	155	211	0.98
Transmembrane Helix	212	233	0.82
Non-Cytoplasmic	234	241	0.74
Transmembrane Helix	242	263	0.81
Cytoplasmic	264	272	0.80
Transmembrane Helix	273	293	0.94
Non-Cytoplasmic	294	303	0.71
Transmembrane Helix	304	325	0.93
Cytoplasmic	326	342	0.77
Transmembrane Helix	343	362	0.92
Non-Cytoplasmic	363	365	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSKACYKL TTITILLLSF TLPSLAGNAE NADVSECKAE SGDLSCHNNK EAQKLKIIAI  60
   61 PSILVASMIG VSLPLFSRSI PALGPDREMS VIVKTLASGV ILATGFMHVL PDSFDDLTSK 120
  121 CLPEDPWQKF PFATFITMIS ALLVLMIESF AMCAYARRTS KREGEVVPLE NGSNSVDTQN 180
  181 DIQTLENGSS YVEKQEKVNE DKTSELLRNK VIAQILELGI VVHSVVIGLA MGASDNKCTV 240
  241 QSLIAALCFH QLFEGMGLGG SILQAQFKSK TNWTMVFFFS VTTPFGIVLG MAIQKIYDET 300
  301 SPTALIVVGV LNACSAGLLI YMALVNLLAH EFFGPKIQGN IKLHVLGYVA TFTGAAGMSL 360
  361 MAKWA