YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCVTGTEA AIRAAACRDG EEASHLKIVA VFAIFLTSVF GVWGPVLLAK YFHGKPLYDK  60
   61 AILVIKCFAA GVILSTSLVH VLPEAFESLA DCQVSSRHPW KDFPFAGLVT MIGAITALLV 120
  121 DLTASEHMGH GGGGGGDGGM EYMPVGKAVG GLEMKEGKCG ADLEIQENSE EEIVKMKQRL 180
  181 VSQVLEIGII FHSVIIGVTM GMSQNKCTIR PLIAALSFHQ IFEGLGLGGC IAQAGFKAGT 240
  241 VVYMCLMFAV TTPLGIVLGM VIFAATGYDD QNPNALIMEG LLGSFSSGIL IYMALVDLIA 300
  301 LDFFHNKMLT TCGESGSRLK KLCFVALVLG SASMSLLALW A

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.67
Transmembrane Helix	28	52	0.83
Cytoplasmic	53	61	0.63
Transmembrane Helix	62	82	0.90
Non-Cytoplasmic	83	102	0.70
Transmembrane Helix	103	124	0.89
Cytoplasmic	125	182	0.75
Transmembrane Helix	183	203	0.82
Non-Cytoplasmic	204	211	0.68
Transmembrane Helix	212	232	0.73
Cytoplasmic	233	241	0.70
Transmembrane Helix	242	265	0.91
Non-Cytoplasmic	266	280	0.80
Transmembrane Helix	281	301	0.91
Cytoplasmic	302	321	0.82
Transmembrane Helix	322	340	0.95
Non-Cytoplasmic	341	341	0.97