YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.53
Transmembrane Helix	9	27	0.58
Non-Cytoplasmic	28	49	0.94
Transmembrane Helix	50	73	0.88
Cytoplasmic	74	82	0.85
Transmembrane Helix	83	103	0.95
Non-Cytoplasmic	104	124	0.93
Transmembrane Helix	125	147	0.90
Cytoplasmic	148	206	0.98
Transmembrane Helix	207	228	0.85
Non-Cytoplasmic	229	236	0.76
Transmembrane Helix	237	258	0.83
Cytoplasmic	259	266	0.71
Transmembrane Helix	267	289	0.90
Non-Cytoplasmic	290	298	0.80
Transmembrane Helix	299	320	0.87
Cytoplasmic	321	338	0.74
Transmembrane Helix	339	357	0.95
Non-Cytoplasmic	358	360	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITQNVKLL LFFFFFISFL FIAVSAGESK CECSHEDDEA NKAGAKKYKI AAIPSVLAAG  60
   61 VIGVMFPLLG KFFPSLKPET TFFFVTKAFA AGVILATGFM HVLPEGYEKL TSPCLKGEAW 120
  121 EFPFTGFIAM VAAILTLSVD SFATSYFHKA HFKTSKRIGD GEEQDAGGGG GGGDELGLHV 180
  181 HAHGHTHGIV GVESGESQVQ LHRTRVVAQV LEVGIIVHSV VIGISLGASQ SPDTAKALFA 240
  241 ALMFHQCFEG LGLGGCIAQG NFNCMSITIM SIFFSVTTPV GIAVGMAISS SYDDSSPTAL 300
  301 IVQGVLNAAS AGILIYMSLV DFLAADFMHP KMQSNTRLQI MAHISLLVGA GVMSLLAKWA 360
  361