YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTTKILC DAGESDLCRD DSAAFLLKFV AIASILLAGA AGVAIPLIGR NRRFLQTEGN  60
   61 LFVAAKAFAA GVILATGFVH MLAGGTEALS NPCLPDFPWS KFPFPGFFAM VAALATLLVD 120
  121 FMGTQYYERK QERNQAATEA AAGSEEIAVV PVVGERVTDN KVFGEEDGGG IHIVGIRAHA 180
  181 AHHRHSHSNS HGTCDGHAHG HSHGHMHGNS DVENGARHVV VSQILELGIV SHSIIIGLSL 240
  241 GVSQSPCTIR PLIAALSFHQ FFEGFALGGC ISQAQFRNKS ATIMACFFAL TTPLGIGIGT 300
  301 AVASSFNSHS PGALVTEGIL DSLSAGILVY MALVDLIAAD FLSKRMSCNL RLQVVSYVML 360
  361 FLGAGLMSAL AIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.92
Transmembrane Helix	29	49	0.93
Cytoplasmic	50	61	0.89
Transmembrane Helix	62	83	0.93
Non-Cytoplasmic	84	103	0.90
Transmembrane Helix	104	124	0.93
Cytoplasmic	125	223	0.97
Transmembrane Helix	224	242	0.65
Non-Cytoplasmic	243	251	0.52
Transmembrane Helix	252	271	0.67
Cytoplasmic	272	282	0.78
Transmembrane Helix	283	303	0.94
Non-Cytoplasmic	304	318	0.80
Transmembrane Helix	319	339	0.86
Cytoplasmic	340	352	0.77
Transmembrane Helix	353	373	0.94
Non-Cytoplasmic	374	374	0.99