YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.92
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	54	0.97
Transmembrane Helix	55	75	0.93
Cytoplasmic	76	87	0.76
Transmembrane Helix	88	108	0.95
Non-Cytoplasmic	109	128	0.93
Transmembrane Helix	129	152	0.86
Cytoplasmic	153	184	0.98
Transmembrane Helix	185	207	0.87
Non-Cytoplasmic	208	215	0.77
Transmembrane Helix	216	237	0.89
Cytoplasmic	238	245	0.79
Transmembrane Helix	246	268	0.91
Non-Cytoplasmic	269	277	0.85
Transmembrane Helix	278	299	0.86
Cytoplasmic	300	315	0.76
Transmembrane Helix	316	336	0.92
Non-Cytoplasmic	337	339	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKNVKLLF FFFSVSLLLI AVVNAAEGHS HGGPKCECSH EDDHENKAGA RKYKIAAIPT  60
   61 VLIAGIIGVL FPLLGKVFPS LRPETCFFFV TKAFAAGVIL ATGFMHVLPE AYEMLNSPCL 120
  121 TSEAWEFPFT GFIAMIAAIL TLSVDTFATS SFYKSHCKAS KRVSDGETGE SSVDSEKVQI 180
  181 LRTRVIAQVL ELGIIVHSVV IGISLGASQS PDAAKALFIA LMFHQCFEGL GLGGCIAQGK 240
  241 FKCLSVTIMS TFFAITTPIG IVVGMGIANS YDESSPTALI VQGVLNAASA GILIYMSLVD 300
  301 LLAADFTHPK MQSNTGLQIM AHIALLLGAG LMSLLAKWA