YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	32	0.73
Non-Cytoplasmic	33	51	0.85
Transmembrane Helix	52	72	0.91
Cytoplasmic	73	84	0.83
Transmembrane Helix	85	105	0.96
Non-Cytoplasmic	106	124	0.88
Transmembrane Helix	125	147	0.87
Cytoplasmic	148	202	0.91
Transmembrane Helix	203	222	0.88
Non-Cytoplasmic	223	233	0.68
Transmembrane Helix	234	253	0.67
Cytoplasmic	254	260	0.57
Transmembrane Helix	261	285	0.85
Non-Cytoplasmic	286	298	0.55
Transmembrane Helix	299	320	0.84
Cytoplasmic	321	330	0.57
Transmembrane Helix	331	354	0.91
Non-Cytoplasmic	355	355	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSECGCFSAT TMLRICVVLI ICLHMCCASS DCTSHDDPVS QDEAEKATKL KLGSIALLLV  60
   61 AGGVGVSLPL IGKRIPALQP ENDIFFMVKA FAAGVILCTG FVHILPDAFE RLSSPCLEDT 120
  121 TAGKFPFAGF VAMLSAMGTL MIDTFATGYY KRQHFSNNHG SKQVNVVVDE EEHAGHVHIH 180
  181 THASHGHTHG STELIRRRIV SQVLEIGIVV HSVIIGISLG ASQSIDTIKP LMAALSFHQF 240
  241 FEGLGLGGCI SLADMKSKST VLMATFFSVT APLGIGIGLG MSSGLGYRKE SKEAIMVEGM 300
  301 LNAASAGILI YMSLVDLLAT DFMNPRLQSN LWLHLAAYLS LVLGAGSMSL LAIWA