YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XTH1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKMEYLSIF GFVSVLYLII RVDARAYEVN GIDQSKVGFD DNYVVTWGQN NVLKLNQGKE  60
   61 VQLSLDHSSG SGFESKNHYE SGFFQIRIKV PPKDTSGVVT AFYLTSKGNT HDEVDFEFLG 120
  121 NKEGKLAVQT NVFTNGKGNR EQKLALWFDP SKDFHTYAIL WNPYQIVLYV DNIPVRVFKN 180
  181 TTSQGMNYPS KPMQVVVSLW NGENWATDGG KSKINWSLAP FKANFQGFNN SGCFTNAEKN 240
  241 ACGSSAYWWN TGSYSKLSDS EQKAYTNVRQ KYMNYDYCSD KVRFHVPPSE CKWNN

Type	Start	End	Confidence
Signal Peptide	1	24	0.55
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	295	0.98