YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XTH29_ARATH
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDSIYLLWI DNRLVVIIMM VMMVSCRCVL GLENINPIFF DEGLSHLFGE GNLIRSPDDR  60
   61 SVRLLLDKYT GSGFISSSMY QHGFFSSLIK LPGAYTAGIV VAFYTSNGDV FVKDHDELDI 120
  121 EFLGNLEGKP WRFQTNMYGN GSTNRGREER YRLWFDPSKE FHRYSILWTP TKIIFWVDDV 180
  181 PIREILRKEE MNGDYPQKPM SLYATIWDAS SWATSGGKFG VDYTFSPFVS EFKDIALDGC 240
  241 NVSDSFPGEN NNNNIGNYNN INCSVSDQFL MSNDYSTISP KQATAMRRFR ERYMYYSYCY 300
  301 DTIRYSVPPP ECVIVTAEKN RFRDTGRLKF GGSHPKVHKA RKKRRRNRST PVVSADL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.68
Transmembrane Helix	12	31	0.74
Non-Cytoplasmic	32	357	0.82