YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV  60
   61 MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL ACGLAGLSAG MAIGIVGDAG 120
  121 VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.51
Transmembrane Helix	13	35	0.92
Cytoplasmic	36	54	0.48
Transmembrane Helix	55	80	0.86
Non-Cytoplasmic	81	92	0.52
Transmembrane Helix	93	117	0.86
Cytoplasmic	118	129	0.46
Transmembrane Helix	130	155	0.87
Non-Cytoplasmic	156	165	0.51