YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL1_ARATH, VAT...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM  60
   61 AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA CGLAGLSAGM AIGIVGDAGV 120
  121 RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.48
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	53	0.46
Transmembrane Helix	54	79	0.86
Non-Cytoplasmic	80	91	0.49
Transmembrane Helix	92	116	0.86
Cytoplasmic	117	128	0.43
Transmembrane Helix	129	154	0.87
Non-Cytoplasmic	155	164	0.48