YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VTI13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR  60
   61 NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA RDELLEAGMA DTLTASADQR 120
  121 SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG 180
  181 KSKKILTTMT RRMNRNKWTI GAIITVLVLA IIFILYFKLT R

Type	Start	End	Confidence
Cytoplasmic	1	197	0.87
Transmembrane Helix	198	217	0.97
Non-Cytoplasmic	218	221	0.64