YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VSP1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILSLSLLL LLAATVSHVQ SSASVPGLIE LLESNTIFGN EAELLEKEGL SINYPNCRSW  60
   61 HLGVETSNII NFDTVPANCK AYVEDYLITS KQYQYDSKTV NKEAYFYAKG LALKNDTINV 120
  121 WIFDLDDTLL SSIPYYAKYG YGTENTAPGA YWSWLESGES TPGLPETLHL YENLLELGIE 180
  181 PIIISDRWKK LSEITIENLK AVGVTKWKHL ILKPNGSKLT QVVYKSKVRN SLVKKGYNIV 240
  241 GNIGDQWADL VEDTPGRVFK LPNPLYYVPS

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	270	0.99