YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA727_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD  60
   61 NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND ERHPLADEDE DDDLFGDRFS 120
  121 VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL 180
  181 LVDKTENLQF QADSFQRQGR QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	212	0.75
Transmembrane Helix	213	233	0.93
Non-Cytoplasmic	234	240	0.62