YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA722_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE  60
   61 NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT AQANSLNKEF GSKLKEHMQY 120
  121 CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG 180
  181 TQMRRKMWFQ NMKIKLIVLA IIIALILIII LSICGGFNCG K

Type	Start	End	Confidence
Cytoplasmic	1	193	0.95
Transmembrane Helix	194	216	0.92
Non-Cytoplasmic	217	221	0.80