YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA721_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE  60
   61 DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT AQANSLNKEF GSKLKEHMQY 120
  121 CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG 180
  181 TQMRRKMWLQ NMKIKLIVLA IIIALILIIV LSVCHGFKC

Type	Start	End	Confidence
Cytoplasmic	1	193	0.96
Transmembrane Helix	194	215	0.94
Non-Cytoplasmic	216	219	0.78