YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA714_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD  60
   61 GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP AYAMNDEFSR VLHQQMEFFS 120
  121 SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL 180
  181 RRALWMKNAK LLVLLTCLIV FLLYIIIASF CGGITLPSCR S

Type	Start	End	Confidence
Cytoplasmic	1	190	0.95
Transmembrane Helix	191	212	0.91
Non-Cytoplasmic	213	221	0.82