YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA713_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD  60
   61 GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ AYSMNDEFSR VLSQQMEFYS 120
  121 NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY 180
  181 RTIMWWRNVK LTIALILVLA LVVYIAMAFV CHGPSLPSCF K

Type	Start	End	Confidence
Cytoplasmic	1	187	0.93
Transmembrane Helix	188	210	0.89
Non-Cytoplasmic	211	221	0.85