YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA712_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR YVFHVKRTDG  60
   61 LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA YAMNDEFSRV LNQQIEYYSN 120
  121 DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN 180
  181 NTVWWRNCKL TLLLILVLLV IIYIGVAFAC HGPTLPSCV

Type	Start	End	Confidence
Cytoplasmic	1	189	0.91
Transmembrane Helix	190	211	0.88
Non-Cytoplasmic	212	219	0.81