YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA711_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG  60
   61 LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA YAMNEEFSRV LSQQIDYYSN 120
  121 DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR 180
  181 SNVWWRNCKL TVLLILLLLV IIYIAVAFLC HGPTLPSCI

Type	Start	End	Confidence
Cytoplasmic	1	186	0.96
Transmembrane Helix	187	209	0.89
Non-Cytoplasmic	210	219	0.83