YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRR58_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTKKLFAL LCLFVTMNQA ISVSDPDDME TFCMKSSRNT TSNTTYNKNL NTLLSTLSNQ  60
   61 SSFANYYNLT TGLASDTVHG MFLCTGDVNR TTCNACVKNA TIEIAKNCTN HREAIIYNVD 120
  121 CMVRYSDKFF LTTLETNPSY WWSSNDLIPK SFGKFGQRLS DKMGEVIVRS SLLSSSFTPY 180
  181 YLMDTTRFDN LYDLESIVQC TPDLDPRNCT TCLKLALQEL TECCGNQVWA FIYTPNCMVS 240
  241 FDTYNSSLPP LPPPSRSGSF SHRGNNKLLG GMVLAVSVSV FAFLSLV

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	267	0.98
Transmembrane Helix	268	286	0.61
Cytoplasmic	287	287	0.59