YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX41_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.98
Transmembrane Helix	54	77	0.87
Non-Cytoplasmic	78	92	0.72
Transmembrane Helix	93	117	0.76
Cytoplasmic	118	130	0.85
Transmembrane Helix	131	153	0.86
Non-Cytoplasmic	154	172	0.84
Transmembrane Helix	173	191	0.85
Cytoplasmic	192	202	0.67
Transmembrane Helix	203	222	0.92
Non-Cytoplasmic	223	229	0.76
Transmembrane Helix	230	253	0.90
Cytoplasmic	254	273	0.88
Transmembrane Helix	274	293	0.92
Non-Cytoplasmic	294	315	0.61
Transmembrane Helix	316	339	0.45
Cytoplasmic	340	354	0.50
Transmembrane Helix	355	378	0.90
Non-Cytoplasmic	379	389	0.55
Transmembrane Helix	390	419	0.69
Cytoplasmic	420	424	0.38
Transmembrane Helix	425	448	0.80
Non-Cytoplasmic	449	454	0.47
Transmembrane Helix	455	477	0.88
Cytoplasmic	478	507	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTETYEPL LTRLHSDSQI TERSSPEIEE FLRRRGSTVT PRWWLKLAVW ESKLLWTLSG  60
   61 ASIVVSVLNY MLSFVTVMFT GHLGSLQLAG ASIATVGIQG LAYGIMLGMA SAVQTVCGQA 120
  121 YGARQYSSMG IICQRAMVLH LAAAVFLTFL YWYSGPILKT MGQSVAIAHE GQIFARGMIP 180
  181 QIYAFALACP MQRFLQAQNI VNPLAYMSLG VFLLHTLLTW LVTNVLDFGL LGAALILSFS 240
  241 WWLLVAVNGM YILMSPNCKE TWTGFSTRAF RGIWPYFKLT VASAVMLCLE IWYNQGLVII 300
  301 SGLLSNPTIS LDAISICMYY LNWDMQFMLG LSAAISVRVS NELGAGNPRV AMLSVVVVNI 360
  361 TTVLISSVLC VIVLVFRVGL SKAFTSDAEV IAAVSDLFPL LAVSIFLNGI QPILSGVAIG 420
  421 SGWQAVVAYV NLVTYYVIGL PIGCVLGFKT SLGVAGIWWG MIAGVILQTL TLIVLTLKTN 480
  481 WTSEVENAAQ RVKTSATENQ EMANAGV