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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TMK1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRRTFLLF SFTFLLLLSL SKADSDGDLS AMLSLKKSLN PPSSFGWSDP DPCKWTHIVC  60
   61 TGTKRVTRIQ IGHSGLQGTL SPDLRNLSEL ERLELQWNNI SGPVPSLSGL ASLQVLMLSN 120
  121 NNFDSIPSDV FQGLTSLQSV EIDNNPFKSW EIPESLRNAS ALQNFSANSA NVSGSLPGFL 180
  181 GPDEFPGLSI LHLAFNNLEG ELPMSLAGSQ VQSLWLNGQK LTGDITVLQN MTGLKEVWLH 240
  241 SNKFSGPLPD FSGLKELESL SLRDNSFTGP VPASLLSLES LKVVNLTNNH LQGPVPVFKS 300
  301 SVSVDLDKDS NSFCLSSPGE CDPRVKSLLL IASSFDYPPR LAESWKGNDP CTNWIGIACS 360
  361 NGNITVISLE KMELTGTISP EFGAIKSLQR IILGINNLTG MIPQELTTLP NLKTLDVSSN 420
  421 KLFGKVPGFR SNVVVNTNGN PDIGKDKSSL SSPGSSSPSG GSGSGINGDK DRRGMKSSTF 480
  481 IGIIVGSVLG GLLSIFLIGL LVFCWYKKRQ KRFSGSESSN AVVVHPRHSG SDNESVKITV 540
  541 AGSSVSVGGI SDTYTLPGTS EVGDNIQMVE AGNMLISIQV LRSVTNNFSS DNILGSGGFG 600
  601 VVYKGELHDG TKIAVKRMEN GVIAGKGFAE FKSEIAVLTK VRHRHLVTLL GYCLDGNEKL 660
  661 LVYEYMPQGT LSRHLFEWSE EGLKPLLWKQ RLTLALDVAR GVEYLHGLAH QSFIHRDLKP 720
  721 SNILLGDDMR AKVADFGLVR LAPEGKGSIE TRIAGTFGYL APEYAVTGRV TTKVDVYSFG 780
  781 VILMELITGR KSLDESQPEE SIHLVSWFKR MYINKEASFK KAIDTTIDLD EETLASVHTV 840
  841 AELAGHCCAR EPYQRPDMGH AVNILSSLVE LWKPSDQNPE DIYGIDLDMS LPQALKKWQA 900
  901 YEGRSDLESS TSSLLPSLDN TQMSIPTRPY GFAESFTSVD GR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle