YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TLC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.91
Transmembrane Helix	110	130	0.79
Non-Cytoplasmic	131	150	0.79
Transmembrane Helix	151	169	0.90
Cytoplasmic	170	178	0.77
Transmembrane Helix	179	200	0.92
Non-Cytoplasmic	201	234	0.71
Transmembrane Helix	235	258	0.88
Cytoplasmic	259	269	0.70
Transmembrane Helix	270	289	0.91
Non-Cytoplasmic	290	309	0.70
Transmembrane Helix	310	331	0.94
Cytoplasmic	332	362	0.70
Transmembrane Helix	363	382	0.65
Non-Cytoplasmic	383	401	0.73
Transmembrane Helix	402	426	0.82
Cytoplasmic	427	436	0.67
Transmembrane Helix	437	457	0.88
Non-Cytoplasmic	458	461	0.51
Transmembrane Helix	462	484	0.63
Cytoplasmic	485	541	0.61
Transmembrane Helix	542	564	0.83
Non-Cytoplasmic	565	618	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLIQTRGI LSLPAKPIGV RRLLQPSHGL KQRLFTTNLP ALSLSSNGHK KFQAFQQIPL  60
   61 GISVSHKERS RGFICKAEAA AAGGGNVFDE GDTAAMAVSP KIFGVEVTTL KKIVPLGLMF 120
  121 FCILFNYTIL RDTKDVLVVT AKGSSAEIIP FLKTWVNLPM AIGFMLLYTK LSNVLSKKAL 180
  181 FYTVIVPFIV YFGAFGFVMY PLSNLIHPEA LADKLLATLG PRFMGPLAIM RIWSFCLFYV 240
  241 MAELWGSVVV SVLFWGFANQ ITTVDEAKKF YPLFGLGANV ALIFSGRTVK YFSNMRKNLG 300
  301 PGVDGWAVSL KAMMSIVVGM GLAICFLYWW VNRYVPLPTR SKKKKVKPQM GTMESLKFLV 360
  361 SSPYIRDLAT LVVAYGISIN LVEVTWKSKL KAQFPSPNEY SAFMGDFSTC TGIATFTMML 420
  421 LSQYVFKKYG WGVAAKITPT VLLLTGVAFF SLILFGGPFA PLVAKLGMTP LLAAVYVGAL 480
  481 QNIFSKSAKY SLFDPCKEMA YIPLDEDTKV KGKAAIDVVC NPLGKSGGAL IQQFMILTFG 540
  541 SLANSTPYLG VILLGIVTAW LAAAKSLEGQ FNTLMSEEEL EREMERASSV KIPVVSQEDA 600
  601 PSGETTSQLS EKSTPTGI