YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP51_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRMIPTSFS SKFQGVLSMN ALRCYVSEFI STFFFVLAAV GSVMSSRKLM AGDVSGPFGV  60
   61 LIPAIANALA LSSSVYISWN VSGGHVNPAV TFAMAVAGRI SVPTAMFYWT SQMIASVMAC 120
  121 LVLKVTVMEQ HVPIYKIAGE MTGFGASVLE GVLAFVLVYT VFTASDPRRG LPLAVGPIFI 180
  181 GFVAGANVLA AGPFSGGSMN PACAFGSAMV YGSFKNQAVY WVGPLLGGAT AALVYDNVVV 240
  241 PVEDDRGSST GDAIGV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	57	0.75
Transmembrane Helix	58	79	0.82
Cytoplasmic	80	88	0.56
Transmembrane Helix	89	123	0.63
Non-Cytoplasmic	124	140	0.68
Transmembrane Helix	141	163	0.89
Cytoplasmic	164	170	0.72
Transmembrane Helix	171	192	0.88
Non-Cytoplasmic	193	217	0.66
Transmembrane Helix	218	239	0.70
Cytoplasmic	240	256	0.74