YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP41_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH  60
   61 AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY WIDQLLASSA ACFLLSYLTG 120
  121 GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN 180
  181 ILAGGAFSGA SMNPARSFGP ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV 240
  241 ADDEQPLLN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	41	0.92
Non-Cytoplasmic	42	49	0.68
Transmembrane Helix	50	73	0.82
Cytoplasmic	74	83	0.48
Transmembrane Helix	84	118	0.66
Non-Cytoplasmic	119	137	0.56
Transmembrane Helix	138	158	0.94
Cytoplasmic	159	167	0.68
Transmembrane Helix	168	190	0.91
Non-Cytoplasmic	191	209	0.72
Transmembrane Helix	210	232	0.85
Cytoplasmic	233	249	0.76