YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP32_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT  60
   61 NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA LIGGRISVIR AIYYWVAQLI 120
  121 GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG 180
  181 IIAPLAIGLI VGANILVGGP FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL 240
  241 IYEYMIIPSV NEPPHHSTHQ PLAPEDY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.84
Transmembrane Helix	27	47	0.81
Non-Cytoplasmic	48	68	0.75
Transmembrane Helix	69	90	0.88
Cytoplasmic	91	110	0.77
Transmembrane Helix	111	132	0.93
Non-Cytoplasmic	133	149	0.87
Transmembrane Helix	150	169	0.93
Cytoplasmic	170	178	0.76
Transmembrane Helix	179	199	0.93
Non-Cytoplasmic	200	223	0.89
Transmembrane Helix	224	246	0.90
Cytoplasmic	247	267	0.94