YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP31_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT  60
   61 NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA LVGGRVTAIR AIYYWIAQLL 120
  121 GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG 180
  181 IIAPLAIGLI VGANILVGGP FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL 240
  241 IYEYMVIPTE PPTHHAHGVH QPLAPEDY

Type	Start	End	Confidence
Cytoplasmic	1	25	0.74
Transmembrane Helix	26	45	0.75
Non-Cytoplasmic	46	65	0.57
Transmembrane Helix	66	90	0.81
Cytoplasmic	91	110	0.55
Transmembrane Helix	111	132	0.91
Non-Cytoplasmic	133	146	0.60
Transmembrane Helix	147	169	0.87
Cytoplasmic	170	178	0.58
Transmembrane Helix	179	203	0.87
Non-Cytoplasmic	204	223	0.68
Transmembrane Helix	224	246	0.91
Cytoplasmic	247	268	0.70