YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP23_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA  60
   61 IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT GFFYWIAQCL GSIVACLLLV 120
  121 FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI 180
  181 VGANILAAGP FSGGSMNPAR SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY 240
  241 EAVETREIRV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	53	0.66
Transmembrane Helix	54	80	0.80
Cytoplasmic	81	87	0.58
Transmembrane Helix	88	122	0.70
Non-Cytoplasmic	123	136	0.72
Transmembrane Helix	137	159	0.88
Cytoplasmic	160	168	0.78
Transmembrane Helix	169	191	0.89
Non-Cytoplasmic	192	213	0.86
Transmembrane Helix	214	236	0.91
Cytoplasmic	237	250	0.82