YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIEIGSVG DSFSVASLKA YLSEFIATLL FVFAGVGSAL AFAKLTSDAA LDPAGLVAVA  60
   61 VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT GFFYWIAQCL GSIVACLLLV 120
  121 FVTNGESVPT HGVAAGLGAI EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI 180
  181 VGANILAAGP FSGGSMNPAR SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY 240
  241 APAPTTESYP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.70
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	53	0.60
Transmembrane Helix	54	80	0.79
Cytoplasmic	81	87	0.49
Transmembrane Helix	88	122	0.71
Non-Cytoplasmic	123	136	0.60
Transmembrane Helix	137	159	0.88
Cytoplasmic	160	168	0.72
Transmembrane Helix	169	191	0.89
Non-Cytoplasmic	192	213	0.78
Transmembrane Helix	214	236	0.90
Cytoplasmic	237	250	0.76