YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA  60
   61 VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT GVFYWIAQLL GSTAACFLLK 120
  121 YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI 180
  181 VGANILAAGP FSGGSMNPAR SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS 240
  241 EHVPLASADF

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.58
Transmembrane Helix	21	43	0.92
Cytoplasmic	44	54	0.51
Transmembrane Helix	55	77	0.90
Non-Cytoplasmic	78	84	0.52
Transmembrane Helix	85	107	0.89
Cytoplasmic	108	115	0.49
Transmembrane Helix	116	135	0.61
Non-Cytoplasmic	136	141	0.52
Transmembrane Helix	142	159	0.92
Cytoplasmic	160	168	0.77
Transmembrane Helix	169	191	0.89
Non-Cytoplasmic	192	213	0.89
Transmembrane Helix	214	236	0.90
Cytoplasmic	237	250	0.90