YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINRIAIGT PGEASRPDAI RAAFAEFFSM VIFVFAGQGS GMAYGKLTGD GPATPAGLVA  60
   61 ASLSHAFALF VAVSVGANVS GGHVNPAVTF GAFIGGNITL LRAILYWIAQ LLGAVVACLL 120
  121 LKVSTGGMET AAFSLSYGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD IGIIAPLAIG 180
  181 LIVGANILVG GAFDGASMNP AVSFGPAVVS WIWTNHWVYW VGPFIGAAIA AIVYDTIFIG 240
  241 SNGHEPLPSN DF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	42	0.86
Non-Cytoplasmic	43	60	0.75
Transmembrane Helix	61	82	0.81
Cytoplasmic	83	102	0.62
Transmembrane Helix	103	123	0.83
Non-Cytoplasmic	124	141	0.80
Transmembrane Helix	142	161	0.93
Cytoplasmic	162	170	0.79
Transmembrane Helix	171	193	0.90
Non-Cytoplasmic	194	216	0.84
Transmembrane Helix	217	238	0.92
Cytoplasmic	239	252	0.88