YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV  60
   61 AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT LLRGILYWIA QLLGSVAACF 120
  121 LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI 180
  181 GFIVGANILA GGAFSGASMN PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI 240
  241 DENAHEQLPT TDY

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	45	0.82
Non-Cytoplasmic	46	57	0.53
Transmembrane Helix	58	85	0.76
Cytoplasmic	86	103	0.49
Transmembrane Helix	104	127	0.83
Non-Cytoplasmic	128	139	0.70
Transmembrane Helix	140	162	0.86
Cytoplasmic	163	172	0.77
Transmembrane Helix	173	197	0.87
Non-Cytoplasmic	198	217	0.87
Transmembrane Helix	218	239	0.93
Cytoplasmic	240	253	0.92