YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA  60
   61 AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL LRGILYWIAQ LLGSVVACLI 120
  121 LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG 180
  181 FIVGANILAG GAFSGASMNP AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN 240
  241 TTHEQLPTTD Y

Type	Start	End	Confidence
Cytoplasmic	1	19	0.72
Transmembrane Helix	20	44	0.81
Non-Cytoplasmic	45	57	0.63
Transmembrane Helix	58	82	0.79
Cytoplasmic	83	102	0.48
Transmembrane Helix	103	126	0.77
Non-Cytoplasmic	127	138	0.55
Transmembrane Helix	139	161	0.86
Cytoplasmic	162	171	0.76
Transmembrane Helix	172	196	0.86
Non-Cytoplasmic	197	216	0.84
Transmembrane Helix	217	238	0.93
Cytoplasmic	239	251	0.86