YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPD3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAISPWLSS PQSFSNPRVT ITDSRRCSSI SAAISVLDSS NEEQHRISSR DHVGMKRRDV  60
   61 MLQIASSVFF LPLAISPAFA ETNASEAFRV YTDETNKFEI SIPQDWQVGQ AEPNGFKSIT 120
  121 AFYPQETSTS NVSIAITGLG PDFTRMESFG KVEAFAETLV SGLDRSWQKP VGVTAKLIDS 180
  181 RASKGFYYIE YTLQNPGEAR KHLYSAIGMA TNGWYNRLYT VTGQFTDEES AEQSSKIQKT 240
  241 VKSFRFI

Type	Start	End	Confidence
Cytoplasmic	1	59	0.66
Transmembrane Helix	60	80	0.63
Non-Cytoplasmic	81	247	0.99