YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP71_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE  60
   61 KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT EELAARNDLV LALPARIEAI 120
  121 PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ 180
  181 GLDMISEGLD ALKNMASDMN EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS 240
  241 SRNFCIDIVL LCIVLGIAAY LYNVLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	243	0.57
Transmembrane Helix	244	264	0.89
Cytoplasmic	265	266	0.43