YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP41_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNRTLLF RKYRNSLRSV RAPLSSSSLT GTRSGGVGPV IEMASTSLLN PNRSYAPIST  60
   61 EDPGTSSKGA ITVGLPPAWV DVSEEISVNI QRARTKMAEL GKAHAKALMP SFGDGKEDQH 120
  121 NIESLTQEIT FLLKKSEKQL QRLSASGPSE DSNVRKNVQR SLATDLQLLS MELRKKQSTY 180
  181 LKRLRQQKED GMDLEMNLSR NRYRPEEDDF GDMLNEHQMS KIKKSEEVSV EREKEIQQVV 240
  241 ESVNDLAQIM KDLSALVIDQ GTIVDRIDYN IENVATTVED GLKQLQKAER TQRHGGMVKC 300
  301 ASVLVILCFI MLLLLILKEI FL

Type	Start	End	Confidence
Signal Peptide	1	34	0.56
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	294	0.70
Transmembrane Helix	295	317	0.92
Cytoplasmic	318	322	0.64