YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP32_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK  60
   61 RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT VVIKQEISAL NSALVDLQLF 120
  121 RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS 180
  181 SNASKESTNP FVRQRPLAAK AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ 240
  241 QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM 300
  301 EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Type	Start	End	Confidence
Cytoplasmic	1	325	0.57
Transmembrane Helix	326	346	0.96
Non-Cytoplasmic	347	347	0.58