YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP31_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE  60
   61 TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN MALSDLQTLQ NMELADGNYS 120
  121 QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA 180
  181 KSVPEPPPWS SSSNPFGNLQ QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV 240
  241 PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR 300
  301 SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA

Type	Start	End	Confidence
Cytoplasmic	1	314	0.61
Transmembrane Helix	315	335	0.96
Non-Cytoplasmic	336	336	0.61