YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE  60
   61 KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD AKLARDFQAV LKEFQKAQQT 120
  121 AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE 180
  181 REQGIQEIHQ QIGEVNEIFK DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT 240
  241 QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Type	Start	End	Confidence
Cytoplasmic	1	245	0.78
Transmembrane Helix	246	267	0.93
Non-Cytoplasmic	268	268	0.79