YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP  60
   61 KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA SQIKKIADAK LAKDFQSVLK 120
  121 EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN 180
  181 EITFNEAIIE EREQGIREIE DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ 240
  241 ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Type	Start	End	Confidence
Cytoplasmic	1	255	0.89
Transmembrane Helix	256	278	0.92
Non-Cytoplasmic	279	279	0.89