YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	81	0.96
Transmembrane Helix	82	103	0.89
Cytoplasmic	104	110	0.85
Transmembrane Helix	111	130	0.93
Non-Cytoplasmic	131	136	0.73
Transmembrane Helix	137	158	0.90
Cytoplasmic	159	169	0.84
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	200	0.83
Transmembrane Helix	201	222	0.93
Cytoplasmic	223	282	0.97
Transmembrane Helix	283	306	0.87
Non-Cytoplasmic	307	318	0.82
Transmembrane Helix	319	342	0.87
Cytoplasmic	343	353	0.75
Transmembrane Helix	354	375	0.83
Non-Cytoplasmic	376	384	0.85
Transmembrane Helix	385	406	0.92
Cytoplasmic	407	424	0.80
Transmembrane Helix	425	446	0.90
Non-Cytoplasmic	447	452	0.74
Transmembrane Helix	453	474	0.93
Cytoplasmic	475	522	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGGFVVGD GQKAYPGKLT PFVLFTCVVA AMGGLIFGYD IGISGGVTSM PSFLKRFFPS  60
   61 VYRKQQEDAS TNQYCQYDSP TLTMFTSSLY LAALISSLVA STVTRKFGRR LSMLFGGILF 120
  121 CAGALINGFA KHVWMLIVGR ILLGFGIGFA NQAVPLYLSE MAPYKYRGAL NIGFQLSITI 180
  181 GILVAEVLNY FFAKIKGGWG WRLSLGGAVV PALIITIGSL VLPDTPNSMI ERGQHEEAKT 240
  241 KLRRIRGVDD VSQEFDDLVA ASKESQSIEH PWRNLLRRKY RPHLTMAVMI PFFQQLTGIN 300
  301 VIMFYAPVLF NTIGFTTDAS LMSAVVTGSV NVAATLVSIY GVDRWGRRFL FLEGGTQMLI 360
  361 CQAVVAACIG AKFGVDGTPG ELPKWYAIVV VTFICIYVAG FAWSWGPLGW LVPSEIFPLE 420
  421 IRSAAQSITV SVNMIFTFII AQIFLTMLCH LKFGLFLVFA FFVVVMSIFV YIFLPETKGI 480
  481 PIEEMGQVWR SHWYWSRFVE DGEYGNALEM GKNSNQAGTK HV