YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ST7R_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	32	0.89
Non-Cytoplasmic	33	63	0.93
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	105	0.88
Transmembrane Helix	106	125	0.94
Non-Cytoplasmic	126	134	0.82
Transmembrane Helix	135	155	0.92
Cytoplasmic	156	194	0.94
Transmembrane Helix	195	214	0.83
Non-Cytoplasmic	215	225	0.68
Transmembrane Helix	226	244	0.85
Cytoplasmic	245	258	0.85
Transmembrane Helix	259	282	0.82
Non-Cytoplasmic	283	288	0.90
Transmembrane Helix	289	310	0.89
Cytoplasmic	311	347	0.84
Transmembrane Helix	348	365	0.53
Non-Cytoplasmic	366	371	0.58
Transmembrane Helix	372	398	0.74
Cytoplasmic	399	432	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP  60
   61 RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP VYKANGLAAY FVTLATYLGL 120
  121 WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM 180
  181 ELYPRIGKSF DIKVFTNCRF GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK 240
  241 FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA 300
  301 GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA 360
  361 RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR AKRDDDRCRS KYGKYWKLYC 420
  421 EKVKYRIIPG IY