YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT42_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.84
Transmembrane Helix	81	102	0.77
Non-Cytoplasmic	103	108	0.54
Transmembrane Helix	109	129	0.83
Cytoplasmic	130	133	0.70
Transmembrane Helix	134	154	0.75
Non-Cytoplasmic	155	163	0.77
Transmembrane Helix	164	182	0.95
Cytoplasmic	183	189	0.65
Transmembrane Helix	190	212	0.83
Non-Cytoplasmic	213	241	0.89
Transmembrane Helix	242	262	0.90
Cytoplasmic	263	269	0.91
Transmembrane Helix	270	291	0.85
Non-Cytoplasmic	292	318	0.89
Transmembrane Helix	319	342	0.76
Cytoplasmic	343	355	0.72
Transmembrane Helix	356	375	0.80
Non-Cytoplasmic	376	390	0.63
Transmembrane Helix	391	410	0.91
Cytoplasmic	411	418	0.49
Transmembrane Helix	419	441	0.82
Non-Cytoplasmic	442	457	0.56
Transmembrane Helix	458	480	0.88
Cytoplasmic	481	677	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAVKDLST ASSSSSKAIP VKIIPLQYPD STSSDPHCHS IPFNDFFSRW TAKIKRMTFF  60
   61 DWIDAIFPCF LWIRTYRWHQ YFKLDLMAGI TVGIMLVPQA MSYARLAGLQ PIYGLYSSFV 120
  121 PVFVYAVFGS SRQLAVGPVA LVSLLVSNAL SGIVDPSEEL YTELAILLAL MVGIFESIMG 180
  181 FLRLGWLIRF ISHSVISGFT TASAVVIGLS QLKYFLGYSV SRSSKIMPVI DSIIAGADQF 240
  241 KWPPFLLGCT ILVILLVMKH VGKAKKELRF IRAAGPLTGL ALGTIIAKVF HPPSITLVGD 300
  301 IPQGLPKFSF PKSFDHAKLL LPTSALITGV AILESVGIAK ALAAKNRYEL DSNSELFGLG 360
  361 VANIFGSLFS AYPTTGSFSR SAVNSESEAK TGLSGLVTGI IIGCSLLFLT PMFKFIPQCA 420
  421 LAAIVISAVS GLVDYEGAIF LWRVDKRDFT LWTITSTTTL FFGIEIGVLI GVGFSLAFVI 480
  481 HESANPHIAV LGRLPGTTVY RNMKQYPEAY TYNGIVIVRI DAPIYFANIS YIKDRLREYE 540
  541 VAIDKHTSKG PDMERIYFVI LEMSPVTYID SSAVEALKDL YEEYKTRGIQ LAISNPNKEV 600
  601 LLTLARAGIV ELIGKEWFFV RVHDAVQVCV HYVNRPTDVE ESSKPSLWRR SGLKNSSTYT 660
  661 EVESNIVLEE PLLSREK