YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT34_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.93
Transmembrane Helix	67	84	0.55
Non-Cytoplasmic	85	92	0.50
Transmembrane Helix	93	127	0.54
Cytoplasmic	128	128	0.22
Transmembrane Helix	129	158	0.67
Non-Cytoplasmic	159	167	0.64
Transmembrane Helix	168	191	0.84
Cytoplasmic	192	202	0.54
Transmembrane Helix	203	221	0.87
Non-Cytoplasmic	222	249	0.69
Transmembrane Helix	250	271	0.88
Cytoplasmic	272	277	0.77
Transmembrane Helix	278	300	0.93
Non-Cytoplasmic	301	328	0.72
Transmembrane Helix	329	353	0.75
Cytoplasmic	354	405	0.51
Transmembrane Helix	406	428	0.82
Non-Cytoplasmic	429	433	0.47
Transmembrane Helix	434	454	0.89
Cytoplasmic	455	463	0.61
Transmembrane Helix	464	492	0.82
Non-Cytoplasmic	493	526	0.63
Transmembrane Helix	527	547	0.34
Cytoplasmic	548	653	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHGTNRVED MASPNNGTAG ETVVEIHSVC LPPKKTAFQK LKKRVGDVFF PDDPLQRFRN  60
   61 QTWRNRVILG LQSLFPIFTW GSQYDLKLLR SDVISGLTIA SLAIPQGISY AKLANLPPIV 120
  121 GLYSSFVPPL IYAVLGSSRH LAVGPVSIAS LVMGSMLSES VSPTQDSILY LKLAFTSTFF 180
  181 AGVFQASLGL LRLGFMIDFL SKATLIGFTA GAAVIVSLQQ LKGLLGIVHF TGKMQIVPVM 240
  241 SSVFNHRSEW SWETIVMGIG FLSILLTTRH ISMRKPKLFW ISAASPLASV IISTLLVYLI 300
  301 RSKTHAISFI GHLPKGLNPP SLNMLYFSGA HLALAIKTGI ITGILSLTEG IAVGRTFASL 360
  361 KNYQVNGNKE MMAIGFMNMA GSCTSCYVTT GSFSRSAVNY NAGAKTAVSN IVMASAVLVT 420
  421 LLFLMPLFYY TPNVILAAII LTAVIGLIDY QAAYKLWKVD KFDFFTCLCS FFGVLFVSVP 480
  481 LGLAIAVAVS VIKILLHVTR PNTSEFGNIP GTQIYQSLGR YREASRIPGF LILAIESPIY 540
  541 FANSTYLQDR ILRWAREEEN RIKENNGTTL KCIILDMTAV SAIDTSGLEA VFELRRRLEK 600
  601 QSLQLVLVNP VGTVMEKLHK SKIIEALGLS GLYLTVGEAV ADLSSTWKAN GQP