YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT32_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.92
Transmembrane Helix	72	92	0.58
Non-Cytoplasmic	93	99	0.44
Transmembrane Helix	100	118	0.64
Cytoplasmic	119	124	0.65
Transmembrane Helix	125	142	0.88
Non-Cytoplasmic	143	152	0.69
Transmembrane Helix	153	175	0.88
Cytoplasmic	176	182	0.64
Transmembrane Helix	183	206	0.84
Non-Cytoplasmic	207	232	0.86
Transmembrane Helix	233	255	0.85
Cytoplasmic	256	261	0.94
Transmembrane Helix	262	284	0.94
Non-Cytoplasmic	285	316	0.94
Transmembrane Helix	317	337	0.91
Cytoplasmic	338	355	0.84
Transmembrane Helix	356	375	0.88
Non-Cytoplasmic	376	389	0.71
Transmembrane Helix	390	408	0.83
Cytoplasmic	409	411	0.45
Transmembrane Helix	412	438	0.76
Non-Cytoplasmic	439	453	0.69
Transmembrane Helix	454	480	0.80
Cytoplasmic	481	646	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKRASQYH QVEIPPPQPF LKSLKNTLNE ILFADDPFRR IRNESKTSKK IELGLRHVFP  60
   61 ILEWARGYSL EYLKSDVISG ITIASLAIPQ GISYAQLANL PPILGLYSSL VPPLVYAIMG 120
  121 SSRDLAVGTV AVASLLTAAM LGKEVNAVVN PKLYLHLAFT ATFFAGLMQT CLGLLRLGFV 180
  181 VEILSHAAIV GFMGGAATVV CLQQLKGLLG LHHFTHSTDI VTVLRSIFSQ SHMWRWESGV 240
  241 LGCCFLIFLL TTKYISKKRP KLFWISAMSP LVSVIFGTIF LYFLHDQFHG IQFIGELKKG 300
  301 INPPSITHLV FTPPYVMLAL KVGIITGVIA LAEGIAVGRS FAMYKNYNID GNKEMIAFGM 360
  361 MNILGSFSSC YLTTGPFSRS AVNYNAGCKT ALSNVVMAVA VAVTLLFLTP LFFYTPLVVL 420
  421 SSIIIAAMLG LVDYEAAIHL WKLDKFDFFV CLSAYLGVVF GTIEIGLILS VGISVMRLVL 480
  481 FVGRPKIYVM GNIQNSEIYR NIEHYPQAIT RSSLLILHID GPIYFANSTY LRDRIGRWID 540
  541 EEEDKLRTSG DISLQYIVLD MSAVGNIDTS GISMLEELNK ILGRRELKLV IANPGAEVMK 600
  601 KLSKSTFIES IGKERIYLTV AEAVAACDFM LHTAKPDSPV PEFNNV