YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.82
Transmembrane Helix	142	160	0.77
Non-Cytoplasmic	161	170	0.64
Transmembrane Helix	171	192	0.84
Cytoplasmic	193	199	0.54
Transmembrane Helix	200	219	0.90
Non-Cytoplasmic	220	250	0.74
Transmembrane Helix	251	273	0.81
Cytoplasmic	274	279	0.81
Transmembrane Helix	280	301	0.94
Non-Cytoplasmic	302	336	0.81
Transmembrane Helix	337	360	0.82
Cytoplasmic	361	373	0.75
Transmembrane Helix	374	395	0.85
Non-Cytoplasmic	396	404	0.61
Transmembrane Helix	405	427	0.87
Cytoplasmic	428	435	0.59
Transmembrane Helix	436	459	0.88
Non-Cytoplasmic	460	465	0.68
Transmembrane Helix	466	494	0.82
Cytoplasmic	495	653	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRAHPVDG SPATDGGHVP MKPSPTRHKV GIPPKQNMFK DFMYTFKETF FHDDPLRDFK  60
   61 DQPKSKQFML GLQSVFPVFD WGRNYTFKKF RGDLISGLTI ASLCIPQDIG YAKLANLDPK 120
  121 YGLYSSFVPP LVYACMGSSR DIAIGPVAVV SLLLGTLLRA EIDPNTSPDE YLRLAFTATF 180
  181 FAGITEAALG FFRLGFLIDF LSHAAVVGFM GGAAITIALQ QLKGFLGIKK FTKKTDIISV 240
  241 LESVFKAAHH GWNWQTILIG ASFLTFLLTS KIIGKKSKKL FWVPAIAPLI SVIVSTFFVY 300
  301 ITRADKQGVQ IVKHLDQGIN PSSFHLIYFT GDNLAKGIRI GVVAGMVALT EAVAIGRTFA 360
  361 AMKDYQIDGN KEMVALGMMN VVGSMSSCYV ATGSFSRSAV NFMAGCQTAV SNIIMSIVVL 420
  421 LTLLFLTPLF KYTPNAILAA IIINAVIPLI DIQAAILIFK VDKLDFIACI GAFFGVIFVS 480
  481 VEIGLLIAVS ISFAKILLQV TRPRTAVLGN IPRTSVYRNI QQYPEATMVP GVLTIRVDSA 540
  541 IYFSNSNYVR ERIQRWLHEE EEKVKAASLP RIQFLIIEMS PVTDIDTSGI HALEDLYKSL 600
  601 QKRDIQLILA NPGPLVIGKL HLSHFADMLG QDNIYLTVAD AVEACCPKLS NEV